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1

PalmXplore: oil palm gene database

Sanusi, Nik Shazana Nik Mohd, Rosli, Rozana, Halim, Mohd Amin Ab, Chan, Kuang-Lim, Nagappan, Jayanthi, Azizi, Norazah, Amiruddin, Nadzirah, Tatarinova, Tatiana V, Low, Eng-Ti Leslie

Journal:

Year:

2018

Language:

english

File:

PDF, 23.40 MB

english, 2018

2

The Impact of MNRI Therapy on the Levels of Neurotransmitters Associated with Inflammatory Processes

Tatarinova, Tatiana V., Deiss, Trina, Franckle, Lorri, Beaven, Susan, Davis, Jeffrey

Journal:

International Journal of Molecular Sciences

Year:

2020

Language:

english

File:

PDF, 1.10 MB

english, 2020

3

WhoGEM: an admixture-based prediction machine accurately predicts quantitative functional traits in plants

Gentzbittel, Laurent, Ben, Cécile, Mazurier, Mélanie, Shin, Min-Gyoung, Lorenz, Todd, Rickauer, Martina, Marjoram, Paul, Nuzhdin, Sergey V., Tatarinova, Tatiana V.

Journal:

Year:

2019

Language:

english

File:

PDF, 4.54 MB

english, 2019

4

Changes in biological pathways during 6,000 years of civilization in Europe

Chekalin, Evgeny, Rubanovich, Alexandr, Tatarinova, Tatiana V., Kasianov, Artem, Bender, Nicole, Chekalina, Marina, Staub, Kaspar, Koepke, Nikola, Rühli, Frank, Bruskin, Sergey, Morozova, Irina

Journal:

Molecular Biology and Evolution

Year:

2018

Language:

english

File:

PDF, 1.32 MB

english, 2018

5

Reply to Mendez et al: the ‘extremely ancient’ chromosome that still isn’t

Elhaik, Eran, Tatarinova, Tatiana V, Klyosov, Anatole A, Graur, Dan

Journal:

European Journal of Human Genetics

Year:

2015

Language:

english

File:

PDF, 79 KB

english, 2015

6

[Methods in Molecular Biology] Biological Networks and Pathway Analysis Volume 1613 || Pharmacologic Manipulation of Wnt Signaling and Cancer Stem Cells

Tatarinova, Tatiana V., Nikolsky, Yuri

Year:

2017

Language:

english

File:

PDF, 640 KB

english, 2017

7

DNA Barcoding the Native Flowering Plants and Conifers of Wales

de Vere, Natasha, Rich, Tim C. G., Ford, Col R., Trinder, Sarah A., Long, Charlotte, Moore, Chris W., Satterthwaite, Danielle, Davies, Helena, Allainguillaume, Joel, Ronca, Sandra, Tatarinova, Tatiana

Journal:

Year:

2012

Language:

english

File:

PDF, 924 KB

english, 2012

8

KULLBACK–LEIBLER MARKOV CHAIN MONTE CARLO — A NEW ALGORITHM FOR FINITE MIXTURE ANALYSIS AND ITS APPLICATION TO GENE EXPRESSION DATA

TATARINOVA, TATIANA, BOUCK, JOHN, SCHUMITZKY, ALAN

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2008

Language:

english

File:

PDF, 458 KB

english, 2008

9

Tumor Suppressors Status in Cancer Cell Line Encyclopedia

Sonkin, Dmitriy, Hassan, Mehedi, Murphy, Denis J., Tatarinova, Tatiana V.

Journal:

Molecular Oncology

Year:

2013

Language:

english

File:

PDF, 471 KB

english, 2013

10

Nonlinear Mixture Models (A Bayesian Approach) || FRONT MATTER

Tatarinova, Tatiana, Schumitzky, Alan

Year:

2015

Language:

english

File:

PDF, 394 KB

english, 2015

11

Organization Features of the Mitochondrial Genome of Sunflower (Helianthus annuus L.) with ANN2-Type Male-Sterile Cytoplasm

Makarenko, Maksim S., Usatov, Alexander V., Tatarinova, Tatiana V., Azarin, Kirill V., Logacheva, Maria D., Gavrilova, Vera A., Kornienko, Igor V., Horn, Renate

Journal:

Year:

2019

Language:

english

File:

PDF, 1.69 MB

english, 2019

12

Two general methods for population pharmacokinetic modeling: non-parametric adaptive grid and non-parametric Bayesian

Tatiana Tatarinova, Michael Neely…

Journal:

Journal of Pharmacokinetics and Pharmacodynamics

Year:

2013

Language:

english

File:

PDF, 529 KB

english, 2013

13

Nonlinear Mixture Models (A Bayesian Approach) || Introduction

Tatarinova, Tatiana, Schumitzky, Alan

Year:

2015

Language:

english

File:

PDF, 166 KB

english, 2015

14

Bioinformatics research at SBB-2019

Orlov, Yuriy L., Galieva, Elvira R., Tatarinova, Tatiana V.

Journal:

BMC Bioinformatics

Year:

2020

File:

PDF, 431 KB

2020

15

Reactions of sodium selenide with ethynyl and bromoethynyl ketones: Stereo- and regioselective synthesis of functionalized divinyl selenides and 1,3-diselenetanes

Vladimir A. Potapov, Valentina N. Elokhina, Lyudmila I. Larina, Tatiana I. Yaroshenko, Anna A. Tatarinova, Svetlana V. Amosova

Journal:

Journal of Organometallic Chemistry

Year:

2009

Language:

english

File:

PDF, 240 KB

english, 2009

16

Nonlinear Mixture Models (A Bayesian Approach) || Bayesian Clustering Methods

Tatarinova, Tatiana, Schumitzky, Alan

Year:

2015

Language:

english

File:

PDF, 344 KB

english, 2015

17

Clinical utility of the low-density Infinium QC genotyping Array in a genomics-based diagnostics laboratory

Ponomarenko, Petr, Ryutov, Alex, Maglinte, Dennis T., Baranova, Ancha, Tatarinova, Tatiana V., Gai, Xiaowu

Journal:

BMC Medical Genomics

Year:

2017

Language:

english

File:

PDF, 571 KB

english, 2017

18

Lengths of Orthologous Prokaryotic Proteins Are Affected by Evolutionary Factors

Tatarinova, Tatiana, Salih, Bilal, Dien Bard, Jennifer, Cohen, Irit, Bolshoy, Alexander

Journal:

BioMed Research International

Year:

2015

Language:

english

File:

PDF, 1.24 MB

english, 2015

19

DNA Methylation - From Genomics to Technology || DNA Methylation in Mammalian and Non-Mammalian Organisms

Tatarinova, Tatiana

Year:

2012

File:

PDF, 1.99 MB

2012

20

Genetics research at the "Centenary of human population genetics" conference and SBB-2019

Tatarinova, Tatiana V., Tabikhanova, Ludmila E., Eslami, Gilda, Bai, Haihua, Orlov, Yuriy L.

Journal:

Year:

2020

File:

PDF, 417 KB

2020

21

Gene expression and nucleotide composition are associated with genic methylation level inOryza sativa

Elhaik, Eran, Pellegrini, Matteo, Tatarinova, Tatiana V

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 410 KB

english, 2014

22

Introduction to the 9th Young Scientists School on Systems Biology and Bioinformatics (SBB’2017)

Orlov, Yuriy L., Tatarinova, Tatiana V., Zakhartsev, Maksim V., Kolchanov, Nikolay A.

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2018

Language:

english

File:

PDF, 66 KB

english, 2018

23

Structural variants in 3000 rice genomes

Fuentes, Roven Rommel, Chebotarov, Dmytro, Duitama, Jorge, Smith, Sean, De la Hoz, Juan Fernando, Mohiyuddin, Marghoob, Wing, Rod A., McNally, Kenneth L., Tatarinova, Tatiana, Grigoriev, Andrey, Maule

Journal:

Genome Research

Year:

2019

Language:

english

File:

PDF, 3.39 MB

english, 2019

24

Methods of Combinatorial Optimization to Reveal Factors Affecting Gene Length

Bolshoy,, Bolshoy,, Tatiana Tatarinova,

Journal:

Bioinformatics and Biology Insights

Year:

2012

Language:

english

File:

PDF, 752 KB

english, 2012

25

Nonlinear Mixture Models (A Bayesian Approach) || Label Switching and Trapping

Tatarinova, Tatiana, Schumitzky, Alan

Year:

2015

Language:

english

File:

PDF, 566 KB

english, 2015

26

The mysterious orphans of Mycoplasmataceae

Tatarinova, Tatiana V., Lysnyansky, Inna, Nikolsky, Yuri V., Bolshoy, Alexander

Journal:

Year:

2016

Language:

english

File:

PDF, 1.68 MB

english, 2016

27

[Methods in Molecular Biology] Biological Networks and Pathway Analysis Volume 1613 || A Weighted SNP Correlation Network Method for Estimating Polygenic Risk Scores

Tatarinova, Tatiana V., Nikolsky, Yuri

Year:

2017

Language:

english

File:

PDF, 515 KB

english, 2017

28

A semi-automated whole exome sequencing workflow leads to increased diagnostic yield and identification of novel candidate variants

Ji, Jianling, Shen, Lishuang, Bootwalla, Moiz, Quindipan, Catherine, Tatarinova, Tatiana, Maglinte, Dennis T, Buckley, Jonathan, Raca, Gordana, Saitta, Sulagna C, Biegel, Jaclyn A, Gai, Xiaowu

Journal:

Molecular Case Studies

Year:

2019

File:

PDF, 707 KB

2019

29

DNA Methylation - From Genomics to Technology || Aberrant DNA Methylation of Imprinted Loci in Male and Female Germ Cells of Infertile Couples

Tatarinova, Tatiana

Year:

2012

Language:

english

File:

PDF, 519 KB

english, 2012

30

AgrobacteriumT-DNA integration inArabidopsisis correlated with DNA sequence compositions that occur frequently in gene promoter regions

Richard G. Schneeberger, Ke Zhang, Tatiana Tatarinova, Max Troukhan, Shing F. Kwok, Josh Drais, Kevin Klinger, Francis Orejudos, Kimberly Macy, Amit Bhakta, James Burns, Gopal Subramanian, Jonathan Do

Journal:

Functional & Integrative Genomics

Year:

2005

Language:

english

File:

PDF, 584 KB

english, 2005

31

Features ofArabidopsisGenes and Genome Discovered using Full-length cDNAs

Nickolai N. Alexandrov, Maxim E. Troukhan, Vyacheslav V. Brover, Tatiana Tatarinova, Richard B. Flavell, Kenneth A. Feldmann

Journal:

Plant Molecular Biology

Year:

2006

Language:

english

File:

PDF, 364 KB

english, 2006

32

Integrated computational approach to the analysis of RNA-seq data reveals new transcriptional regulators of psoriasis

Zolotarenko, Alena, Chekalin, Evgeny, Mesentsev, Alexandre, Kiseleva, Ludmila, Gribanova, Elena, Mehta, Rohini, Baranova, Ancha, Tatarinova, Tatiana V, Piruzian, Eleonora S, Bruskin, Sergey

Journal:

Experimental and Molecular Medicine

Year:

2016

Language:

english

File:

PDF, 5.88 MB

english, 2016

33

[Methods in Molecular Biology] Biological Networks and Pathway Analysis Volume 1613 || sbv IMPROVER: Modern Approach to Systems Biology

Tatarinova, Tatiana V., Nikolsky, Yuri

Year:

2017

Language:

english

File:

PDF, 116 KB

english, 2017

34

[Methods in Molecular Biology] Biological Networks and Pathway Analysis Volume 1613 || Mathematical Justification of Expression-Based Pathway Activation Scoring (PAS)

Tatarinova, Tatiana V., Nikolsky, Yuri

Year:

2017

Language:

english

File:

PDF, 898 KB

english, 2017

35

[Methods in Molecular Biology] Biological Networks and Pathway Analysis Volume 1613 || Extracting the Strongest Signals from Omics Data: Differentially Expressed Pathways and Beyond

Tatarinova, Tatiana V., Nikolsky, Yuri

Year:

2017

Language:

english

File:

PDF, 1.35 MB

english, 2017

36

Geographic population structure analysis of worldwide human populations infers their biogeographical origins

Elhaik, Eran, Tatarinova, Tatiana, Chebotarev, Dmitri, Piras, Ignazio S., Maria Calò, Carla, De Montis, Antonella, Atzori, Manuela, Marini, Monica, Tofanelli, Sergio, Francalacci, Paolo, Pagani, Luca,

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 4.39 MB

english, 2014

37

[IEEE 2019 25th Conference of Open Innovations Association (FRUCT) - Helsinki, Finland (2019.11.5-2019.11.8)] 2019 25th Conference of Open Innovations Association (FRUCT) - Intelligent Support for Clinical Processes Based on Automaton Approach

Vatyan, Alexandra, Tatarinova, Anna, Niyogi, Rajdeep, Dobrenko, Natalia, Tkachenko, Mark, Gusarova, Natalia, Shalyto, Anatoly, Boytsov, Vitaly, Egorov, Nikolay, Treshkur, Tatiana, Ryngach, Elena

Year:

2019

File:

PDF, 657 KB

2019

38

DNA Methylation - From Genomics to Technology || Effects of Dietary Nutrients on DNA Methylation and Imprinting

Tatarinova, Tatiana

Year:

2012

File:

PDF, 262 KB

2012

39

Nonlinear Mixture Models (A Bayesian Approach) || Treatment of Mixture Models with an Unknown Number of Components

Tatarinova, Tatiana, Schumitzky, Alan

Year:

2015

Language:

english

File:

PDF, 319 KB

english, 2015

40

A semi-automated whole exome sequencing workflow leads to increased diagnostic yield and identification of novel candidate variants

Ji, Jianling, Shen, Lishuang, Bootwalla, Moiz, Quindipan, Catherine, Tatarinova, Tatiana, Maglinte, Dennis T, Buckley, Jonathan, Raca, Gordana, Saitta, Sulagna C, Biegel, Jaclyn A, Gai, Xiaowu

Journal:

Molecular Case Studies

Year:

2019

Language:

english

File:

PDF, 707 KB

english, 2019

41

Artificial microRNAs (amiRNAs) engineering – On how microRNA-based silencing methods have affected current plant silencing research

Gaurav Sablok, Álvaro L. Pérez-Quintero, Mehedi Hassan, Tatiana V. Tatarinova, Camilo López

Journal:

Biochemical and Biophysical Research Communications

Year:

2011

Language:

english

File:

PDF, 351 KB

english, 2011

42

Seqping: gene prediction pipeline for plant genomes using self-training gene models and transcriptomic data

Chan, Kuang-Lim, Rosli, Rozana, Tatarinova, Tatiana V., Hogan, Michael, Firdaus-Raih, Mohd, Low, Eng-Ti Leslie

Journal:

BMC Bioinformatics

Year:

2017

Language:

english

File:

PDF, 700 KB

english, 2017

43

[Methods in Molecular Biology] Biological Networks and Pathway Analysis Volume 1613 || A Practical Guide to Quantitative Interactor Screening with Next-Generation Sequencing (QIS-Seq)

Tatarinova, Tatiana V., Nikolsky, Yuri

Year:

2017

Language:

english

File:

PDF, 211 KB

english, 2017

44

[Methods in Molecular Biology] Biological Networks and Pathway Analysis Volume 1613 || ArrayTrack: An FDA and Public Genomic Tool

Tatarinova, Tatiana V., Nikolsky, Yuri

Year:

2017

Language:

english

File:

PDF, 928 KB

english, 2017

45

WhoGEM: an admixture-based prediction machine accurately predicts quantitative functional traits in plants

Gentzbittel, Laurent, Ben, Cécile, Mazurier, Mélanie, Shin, Min-Gyoung, Lorenz, Todd, Rickauer, Martina, Marjoram, Paul, Nuzhdin, Sergey V., Tatarinova, Tatiana V.

Journal:

Year:

2019

File:

PDF, 4.54 MB

2019

46

DNA methylation changes in clonally propagated oil palm

Sarpan, Norashikin, Taranenko, Elizaveta, Ooi, Siew-Eng, Low, Eng-Ti Leslie, Espinoza, Alejandro, Tatarinova, Tatiana V., Ong-Abdullah, Meilina

Journal:

Plant Cell Reports

Year:

2020

File:

PDF, 7.14 MB

2020

47

Mining of miRNAs and potential targets from gene oriented clusters of transcripts sequences of the anti-malarial plant,Artemisia annua

Álvaro L. Pérez-Quintero, Gaurav Sablok, Tatiana V. Tatarinova, Ana Conesa, Jimmy Kuo, Camilo López

Journal:

Biotechnology Letters

Year:

2012

Language:

english

File:

PDF, 331 KB

english, 2012

48

[Methods in Molecular Biology] Biological Networks and Pathway Analysis Volume 1613 || Analysis of cis-Regulatory Elements in Gene Co-expression Networks in Cancer

Tatarinova, Tatiana V., Nikolsky, Yuri

Year:

2017

Language:

english

File:

PDF, 571 KB

english, 2017

49

[Methods in Molecular Biology] Biological Networks and Pathway Analysis Volume 1613 || Semantic Data Integration and Knowledge Management to Represent Biological Network Associations

Tatarinova, Tatiana V., Nikolsky, Yuri

Year:

2017

Language:

english

File:

PDF, 731 KB

english, 2017

50

The ‘extremely ancient’ chromosome that isn’t: a forensic bioinformatic investigation of Albert Perry’s X-degenerate portion of the Y chromosome

Elhaik, Eran, Tatarinova, Tatiana V, Klyosov, Anatole A, Graur, Dan

Journal:

European Journal of Human Genetics

Year:

2014

Language:

english

File:

PDF, 290 KB

english, 2014

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